Pearson correlation coefficients for fitness estimates for amino-acid mutations made from subsets of sequences from different clades or different geographic regions. Correlations are calculated separately for spike and non-spike mutations, and the x-axis indicates the threshold for minimum expected counts for a mutation to be included in the correlations. The correlations include only mutations at the sites with the same wildtype identity in the clades.
You can mouseover points for details.
See Bloom and Neher (2023) for a paper describing the work.
See https://github.com/jbloomlab/SARS2-mut-fitness for full computer code and data.
See https://jbloomlab.github.io/SARS2-mut-fitness/ for links to all interactive plots.
This plot is for the public_2023-10-01 dataset. Here are all plots for that dataset.