Interactive plots of the SARS-CoV-2 mutational spectrum, as estimated at 4-fold degenerate synonymous sites. The plots are as following:

• Fractions and relative rates of different mutation types

• PCA of mutation spectra

• PCA of mutation spectra by geographic region

• PCA of mutation spectra excluding top mutations

• PCA of mutation spectra with partitioned genome

Note that the GitHub repository with the code and the processed data is at https://github.com/jbloomlab/SARS2-mut-spectrum

These plots accompany the paper “Evolution of the SARS-CoV-2 mutational spectrum” by Bloom, Beichman, Neher, & Harris.