Index

A

AAS_NOSTOP (in module binarymap.binarymap) AAS_WITHGAP (in module binarymap.binarymap) AAS_WITHSTOP (in module binarymap.binarymap)

AAS_WITHSTOP_WITHGAP (in module binarymap.binarymap) all_subs (binarymap.binarymap.BinaryMap property) alphabet (binarymap.binarymap.BinaryMap attribute)

B

binary_sites (binarymap.binarymap.BinaryMap attribute) binary_to_sub_str() (binarymap.binarymap.BinaryMap method) binary_variants (binarymap.binarymap.BinaryMap attribute) binarylength (binarymap.binarymap.BinaryMap attribute)

binarymap module BinaryMap (class in binarymap.binarymap) binarymap.binarymap module

F

func_scores (binarymap.binarymap.BinaryMap attribute)

func_scores_var (binarymap.binarymap.BinaryMap attribute)

I

i_to_sub() (binarymap.binarymap.BinaryMap method)

M

module binarymap binarymap.binarymap

N

n_post (binarymap.binarymap.BinaryMap attribute)

n_pre (binarymap.binarymap.BinaryMap attribute) nvariants (binarymap.binarymap.BinaryMap attribute)

S

sites_as_str (binarymap.binarymap.BinaryMap attribute) sub_str_to_binary() (binarymap.binarymap.BinaryMap method) sub_str_to_indices() (binarymap.binarymap.BinaryMap method)

sub_to_i() (binarymap.binarymap.BinaryMap method) substitution_variants (binarymap.binarymap.BinaryMap attribute) substitutions_col (binarymap.binarymap.BinaryMap attribute)