Growth rates of 2023 H3 influenza viruses versus sequencing-based neutralization assay titers
For the full analysis, see
https://github.com/jbloomlab/flu_H3_2023_seqneut_vs_growth
Strain titers versus growth advantage
protset='gisaid-ha1-within1'
mlrfit='2023-mincounts80'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
mlrfit='2023-mincounts80-keepother'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
mlrfit='2023-mincounts30'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
mlrfit='2023-mincounts40'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
mlrfit='2023-mincounts50'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
mlrfit='2023-mincounts60'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
protset='gisaid-ha1-exact'
mlrfit='2023-mincounts80'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
mlrfit='2023-mincounts80-keepother'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
mlrfit='2023-mincounts30'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
mlrfit='2023-mincounts40'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
mlrfit='2023-mincounts50'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
mlrfit='2023-mincounts60'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
protset='gisaid-ectodomain-within1'
mlrfit='2023-mincounts80'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
mlrfit='2023-mincounts80-keepother'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
mlrfit='2023-mincounts30'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
mlrfit='2023-mincounts40'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
mlrfit='2023-mincounts50'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
mlrfit='2023-mincounts60'
sera='child-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='adultpostvax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='child-and-adultprevax-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
sera='all-sera'
growth vs titers
simplified growth vs titers
simplified titer cutoff
mutations vs titers
MLR fits of growth advantage
protset='gisaid-ha1-within1'
mlrfit='2023-mincounts80'
mlrfit='2023-mincounts80-keepother'
mlrfit='2023-mincounts30'
mlrfit='2023-mincounts40'
mlrfit='2023-mincounts50'
mlrfit='2023-mincounts60'
protset='gisaid-ha1-exact'
mlrfit='2023-mincounts80'
mlrfit='2023-mincounts80-keepother'
mlrfit='2023-mincounts30'
mlrfit='2023-mincounts40'
mlrfit='2023-mincounts50'
mlrfit='2023-mincounts60'
protset='gisaid-ectodomain-within1'
mlrfit='2023-mincounts80'
mlrfit='2023-mincounts80-keepother'
mlrfit='2023-mincounts30'
mlrfit='2023-mincounts40'
mlrfit='2023-mincounts50'
mlrfit='2023-mincounts60'
Comparison of MLR fits
correlation matrix
scatter plot