Sequencing-based neutralization assays of 2023-2024 human serum samples versus H3N2 influenza libraries

The numerical data and computer code are at https://github.com/jbloomlab/flu_seqneut_H3N2_2023-2024

Titers for all sera

Interactive chart of titers

Per-serum neutralization titers

PennVaccineCohort

• PENN23_y1949_s012_d0
• PENN23_y1949_s012_d28
• PENN23_y1951_s014_d0
• PENN23_y1951_s014_d28
• PENN23_y1956_s042_d0
• PENN23_y1956_s042_d28
• PENN23_y1957_s008_d0
• PENN23_y1957_s008_d28
• PENN23_y1960_s003_d0
• PENN23_y1960_s003_d28
• PENN23_y1963_s051_d0
• PENN23_y1963_s051_d28
• PENN23_y1964_s006_d0
• PENN23_y1964_s006_d28
• PENN23_y1966_s057_d0
• PENN23_y1966_s057_d28
• PENN23_y1968_s033_d0
• PENN23_y1968_s033_d28
• PENN23_y1968_s049_d0
• PENN23_y1968_s049_d28
• PENN23_y1971_s044_d0
• PENN23_y1971_s044_d28
• PENN23_y1974_s034_d0
• PENN23_y1974_s034_d28
• PENN23_y1975_s030_d0
• PENN23_y1975_s030_d28
• PENN23_y1976_s028_d0
• PENN23_y1976_s028_d28
• PENN23_y1977_s035_d0
• PENN23_y1977_s035_d28
• PENN23_y1978_s039_d0
• PENN23_y1978_s039_d28
• PENN23_y1980_s016_d0
• PENN23_y1980_s016_d28
• PENN23_y1981_s053_d0
• PENN23_y1981_s053_d28
• PENN23_y1984_s041_d0
• PENN23_y1984_s041_d28
• PENN23_y1984_s047_d0
• PENN23_y1984_s047_d28
• PENN23_y1985_s015_d0
• PENN23_y1985_s015_d28
• PENN23_y1986_s004_d0
• PENN23_y1986_s004_d28
• PENN23_y1987_s010_d0
• PENN23_y1987_s010_d28
• PENN23_y1987_s037_d0
• PENN23_y1987_s037_d28
• PENN23_y1988_s031_d0
• PENN23_y1988_s031_d28
• PENN23_y1989_s026_d0
• PENN23_y1989_s026_d28
• PENN23_y1989_s052_d0
• PENN23_y1989_s052_d28
• PENN23_y1993_s020_d0
• PENN23_y1993_s020_d28
• PENN23_y1994_s005_d0
• PENN23_y1994_s005_d28
• PENN23_y1994_s024_d0
• PENN23_y1994_s024_d28
• PENN23_y1995_s002_d0
• PENN23_y1995_s002_d28
• PENN23_y1996_s043_d0
• PENN23_y1996_s043_d28
• PENN23_y1996_s056_d0
• PENN23_y1996_s056_d28
• PENN23_y1997_s027_d0
• PENN23_y1997_s027_d28
• PENN23_y1997_s045_d0
• PENN23_y1997_s045_d28
• PENN23_y1999_s046_d0
• PENN23_y1999_s046_d28
• PENN23_y1999_s048_d0
• PENN23_y1999_s048_d28
• PENN23_y2001_s017_d0
• PENN23_y2001_s017_d28
• PENN23_y2001_s025_d0
• PENN23_y2001_s025_d28

SCH

• SCH23_y2009_s001
• SCH23_y2009_s002
• SCH23_y2009_s004
• SCH23_y2009_s005
• SCH23_y2009_s006
• SCH23_y2009_s007
• SCH23_y2009_s009
• SCH23_y2010_s010
• SCH23_y2010_s011
• SCH23_y2011_s012
• SCH23_y2011_s013
• SCH23_y2012_s014
• SCH23_y2012_s016
• SCH23_y2012_s017
• SCH23_y2012_s018
• SCH23_y2013_s020
• SCH23_y2013_s021
• SCH23_y2013_s023
• SCH23_y2013_s024
• SCH23_y2014_s025
• SCH23_y2014_s026
• SCH23_y2014_s027
• SCH23_y2014_s028
• SCH23_y2014_s029
• SCH23_y2015_s031
• SCH23_y2015_s032
• SCH23_y2015_s033
• SCH23_y2015_s034
• SCH23_y2015_s035
• SCH23_y2016_s036
• SCH23_y2016_s037
• SCH23_y2016_s038
• SCH23_y2016_s039
• SCH23_y2016_s040
• SCH23_y2017_s041
• SCH23_y2017_s042
• SCH23_y2018_s043
• SCH23_y2018_s044
• SCH23_y2018_s045
• SCH23_y2018_s046
• SCH23_y2018_s047
• SCH23_y2019_s048
• SCH23_y2019_s049
• SCH23_y2019_s050
• SCH23_y2020_s051
• SCH23_y2020_s052
• SCH23_y2020_s053
• SCH23_y2020_s054
• SCH23_y2020_s055
• SCH23_y2021_s056
• SCH23_y2021_s057
• SCH23_y2021_s059
• SCH23_y2022_s062
• SCH23_y2022_s064
• SCH23_y2022_s066
• SCH23_y2022_s067

AusVaccineCohort

• AUS24_s001_postvax
• AUS24_s001_prevax
• AUS24_s002_postvax
• AUS24_s002_prevax
• AUS24_s004_postvax
• AUS24_s004_prevax
• AUS24_s006_postvax
• AUS24_s006_prevax
• AUS24_s007_postvax
• AUS24_s007_prevax
• AUS24_s008_postvax
• AUS24_s008_prevax
• AUS24_s009_postvax
• AUS24_s009_prevax
• AUS24_s010_postvax
• AUS24_s010_prevax

PooledSera

• PennPostVax_pool
• PennPreVax_PennPostVax_pool
• PennPreVax_pool
• SCHPennPrePost_pool
• SCH_PennPostVax_pool
• SCH_PennPreVax_pool
• SCH_pool

pilot

• A230043d0_100k
• A230043d0_150k
• A230043d0_200k
• A230043d28_100k
• A230043d28_150k
• A230043d28_200k

Per-plate counts and curve fits

PennVaccineCohort

• plate15
• plate16
• plate22
• plate23
• plate24
• plate27
• plate28
• plate29
• plate30
• plate33
• plate34
• plate35

SCH

• plate17
• plate18
• plate25
• plate26
• plate31
• plate32
• plate36

AusVaccineCohort

• plate37
• plate40
• plate41

PooledSera

• plate38
• plate39

pilot

• plate19_100k
• plate20_150k
• plate21_200k

Summary of data dropped during quality control

Notebook summarizing QC drops