.. _examples:

=========
Examples
=========

Here are some examples that illustrate use of ``pdb_prot_align``:

.. toctree::
   :maxdepth: 1

   CoV_Spike
   flu_HAs
   pymol_example
   nglview_example

The examples can be run as interactive Jupyter notebooks on `mybinder <https://mybinder.readthedocs.io>`_ by going to the `following link <https://mybinder.org/v2/gh/jbloomlab/pdb_prot_align/master?filepath=notebooks>`_ (it may take a minute to load) and then opening the notebook you want to run.