phydmslib package¶

phydmslib¶

phydmslib is the Python API for phydms.

Submodules¶

  • phydmslib.constants module
  • phydmslib.file_io module
  • phydmslib.models module
  • phydmslib.numutils module
  • phydmslib.numutils module
  • phydmslib.numutils module
  • phydmslib.numutils module
  • phydmslib.parsearguments module
  • phydmslib.simulate module
  • phydmslib.treelikelihood module
  • phydmslib.utils module
  • phydmslib.weblogo module

Logo

phydms

Software for phylogenetic analyses informed by deep mutational scanning.

https://secure.travis-ci.org/jbloomlab/phydms.svg?branch=master

Navigation

  • Installation
  • how to use phydms
  • the phydms program
  • auxiliary programs
  • Experimentally Informed Codon Models
  • Numerical implementation
  • phydmslib package
  • Acknowledgments and citations
  • Indices and tables

Related Topics

  • Documentation overview
    • Previous: Numerical implementation
    • Next: phydmslib.constants module

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