Interactive plot of neutral mutation rates for each SARS-CoV-2 clade estimated using four-fold degenerate synonymous sites.
The plot at left shows the fraction of all mutations at four-fold degenerate sites that are of each type, and the plot at right shows the relative rates of these mutations obtained after normalized for nucleotide composition.
You can mouseover points for details, click/shift-click on the bar at bottom to select specific mutation types, and click/shift-click on the legend at right to select specific clades.
See Bloom, Beichman, Neher, & Harris (2023) for more details on the mutation rates are estimated.
See Bloom and Neher (2023) for a paper describing the work.
See https://github.com/jbloomlab/SARS2-mut-fitness for full computer code and data.
See https://jbloomlab.github.io/SARS2-mut-fitness/ for links to all interactive plots.
This plot is for the gisaid_2024-04-24 dataset. Here are all plots for that dataset.