Interactive plot of average counts per nucleotide site averaged over all clades and sites. Counts are reported separately for the expected counts (estimated from 4-fold degenerate sites) and the counts for all synonymous mutations (including 4-fold degenerate sites), nonsynonymous mutations, and stop mutations. Counts are stratified by the type of nucleotide change in the mutation.
You can mouseover points for details and click/shift-click the legend to highlight specific types of counts.
See Bloom and Neher (2023) for a paper describing the work.
See https://github.com/jbloomlab/SARS2-mut-fitness for full computer code and data.
See https://jbloomlab.github.io/SARS2-mut-fitness/ for links to all interactive plots.
This plot is for the public_2023-05-11 dataset. Here are all plots for that dataset.