Acknowledgements

alignparse is written by the Bloom lab.

For the full list of contributors to alignparse, see here.

If you use alignparse in your research, please cite the following reference:

Crawford KHD and Bloom JD. “alignparse: A Python package for parsing complex features from high-throughput long-read sequencing.”. Journal of Open Source Software, 4:44, 1915 (2019).

If you use the alignparse.minimap2 module to run minimap2, please also cite the reference for minimap2.