ExamplesΒΆ

The alignparse package is designed to aid in the analysis of long-read sequencing of user-defined amplicons. Major functionaly includes:
  • The alignparse.targets.Targets class for defining reference sequence Targets, aligning reads, and parsing features from aligned reads.

  • The alignparse.consensus for analyzing mutations and sequencing accuracy, especially for sequences grouped by shared barcodes.

Here are some examples that demonstrate how to utilize this functionality and other aspects of the alignparse package:

The actual notebooks and input files used in these examples are available here.