Documentation for dmslogo¶

dmslogo is a Python package written by the Bloom lab for making sequence logo plots of deep mutational scanning data.

It allows you to make figures like this with just a single plotting command:

facet plot

Plot showing antibody selection across the entirety of HIV Env, and zooming in on mutations at strongly selected sites. Created using the dmslogo.facet.facet_plot command as shown in the Examples.¶

It also allows you to heavily customize your logo plots, such as by coloring specific letters at specific sites or using Comic Sans font:

comic sans plot

Logo plot with custom letter coloring and Comic Sans font. Created using the dmslogo.logo.draw_logo command as shown in the Examples.¶

Contents¶

  • Installation
  • Examples
  • dmslogo package
  • package index
  • Acknowledgements

Logo

dmslogo

Sequence logos for deep mutational scanning

https://secure.travis-ci.org/jbloomlab/dmslogo.svg?branch=master

Navigation

  • Installation
  • Examples
  • dmslogo package
  • package index
  • Acknowledgements

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