Index

A

align_prots_mafft() (in module pdb_prot_align.utils)

aligned_site_map() (in module pdb_prot_align.utils) alignment_to_count_df() (in module pdb_prot_align.utils)

C

CBBPALETTE (in module pdb_prot_align.colorschemes) CBPALETTE (in module pdb_prot_align.colorschemes)

cmap (pdb_prot_align.colorschemes.ValueToColorMap attribute) color_by_site() (in module pdb_prot_align.pymol_struct) colorscheme_by_site() (in module pdb_prot_align.nglview_struct)

G

genbank_to_feature_df() (in module pdb_prot_align.genbank)

get_parser() (in module pdb_prot_align.main)

M

maxvalue (pdb_prot_align.colorschemes.ValueToColorMap attribute)

minvalue (pdb_prot_align.colorschemes.ValueToColorMap attribute)

P

pdb_prot_align (module) pdb_prot_align.colorschemes (module) pdb_prot_align.genbank (module) pdb_prot_align.main (module)

pdb_prot_align.nglview_struct (module) pdb_prot_align.pymol_struct (module) pdb_prot_align.utils (module) pdb_seq_to_number() (in module pdb_prot_align.utils)

R

render_html() (in module pdb_prot_align.nglview_struct)

run() (in module pdb_prot_align.main)

S

scale_bar() (pdb_prot_align.colorschemes.ValueToColorMap method)

strip_gaps_to_ref() (in module pdb_prot_align.utils)

V

val_to_color() (pdb_prot_align.colorschemes.ValueToColorMap method)

ValueToColorMap (class in pdb_prot_align.colorschemes)